20 Must-Visit Hidden Gems in Japan for an Authentic Experience

Tokyo, Kyoto and Osaka might pop to mind when you think of Japan.

While these cities are iconic, Japan has so much more to offer beyond the beaten tourist path.

If you want to see the real Japan—the traditional, natural, and local side of the nation—then you need to include the hidden gems the country has to offer on your itinerary.

This why today in this article I will explain 20 hidden gems in Japan that you should visit.

They provide a closer-to-the-surface experience, away from the tourist hubs, and an aspect of Japan you don’t often see.

1. Tottori Sand Dunes, Tottori Prefecture

The Tottori Sand Dunes are the only large sand dunes of Japan and stretch along the coast of the Sea of Japan.

Strolling these enormous dunes is like entering an entire new universe. And, for a different experience, you can even try sandboarding or hop on a camel for a memorable excursion.

2. Shirakawa-go, Gifu Prefecture

Shirakawa Go which is known for their traditional gassho-zukuri farmhouses with steep thatched roofs, is a Unesco World Heritage site.

Visit in the winter when the village is blanketed in snow — it’s as if you’re walking through a postcard.

3. Aogashima Island, Tokyo

Aogashima, far from the bustling streets of Tokyo, is a volcanic island in the Philippine Sea.

Hiking, hot springs and stargazing on this remote island It’s the ideal escape for anyone wanting to escape the city and reconnect with nature.

4. Taketomi Island, Okinawa Prefecture

Taketomi is a small, perfect island of wandering sandy streets with a traditional Ryukyu village surrounded by turquoise waters in Okinawa.

Cycle at your own pace around this quiet island by hiring a bike.

5. Koyasan, Wakayama Prefecture

Mount Koya is the center of Shingon Buddhism, with over 100 temples.

Spend a night in a temple lodging (shukubo) for a chance to experience firsthand Buddhist culture — vegetarian meals, morning prayers.

6. Kanazawa, Ishikawa Prefecture

Kanazawa is an historical city, famous for stunningly preserved Edo-period quarters, samurai houses and the gorgeous Kenrokuen Garden.

It’s a cultural treasure trove that gives a peek into Japan’s history.

7. Nachi Falls, Wakayama Prefecture

Nachi Falls is 133m (436ft) tall, one of the most beautiful waterfalls in Japan.

The pristine waters of the waterfall is one part of a sacred site in the Kumano region, and the breathtaking Seigantoji Temple is nearby, creating this serene and spiritual experience.

8. Ouchi-juku (Fukushima Prefecture)

They are 延岡町 (Ouchi-juku), an Edo period post town with rows of thatched-roof houses along the streets.

It feels as if you’ve traveled back in time, and the preserved architecture and traditional shops of the town make it an interesting place to wander around.

9. Gunkanjima (Battleship Island), Nagasaki Prefecture

Gunkanjima is a deserted island that was once a bustling coal mine.

Now deserted, the island is home to hauntingly beautiful ruins that speak of Japan’s industrial heritage.

A closer look is also possible with guided tours.

10. Yakushima, Kagoshima Prefecture

Yakushima is a subtropical island famous for its ancient cedar trees, some more than 1,000 years old.

Studio Ghibli’s animated film Princess Mononoke drew its inspiration from the island’s verdant forests and unique wildlife. It’s a hiker’s paradise.

11. Matsuri at Iya Valley, Tokushima Prefecture

Iya Valley is a rustic, mountainous region featuring steep gorges, vine bridges and traditional thatched-roof houses.

The rugged beauty of the valley instead, its remote location, make it one of Japan’s best-kept secrets.

12. Shodoshima, Kagawa Prefecture

Shodoshima, in the Seto Inland Sea, is known for its olive groves and Mediterranean-like climate.

In addition to soy sauce production, the prefecture is also known for its beautiful views, especially the Kankakei Gorge.

13. Kyoto Prefecture Amanohashidate

Amanohashidate, or “bridge to heaven,” is a natural sandbar that stretches across the mouth of Miyazu Bay.

The sandbar is one of Japan’s three quintessential views, and walking or cycling across it is a peaceful experience.

14. Hida Furukawa, Gifu Prefecture

Hida Furukawa is a beautiful town known for its traditional architecture, quiet canals, and wooden sake breweries.

It’s less touristy than nearby Takayama, giving it a more relaxed feel.

15. Kiso Valley, Nagano Prefecture

The Nakasendo Trail, an ancient route connecting Kyoto and Edo (now Tokyo), runs through the Kiso Valley.

Strolling along this trail, especially in between the historic post towns of Magome and Tsumago, provides a glimpse into Japan’s feudal past.

16. Kurashiki, Okayama Prefecture

Kurashiki is a quaint city with a scenic historic district, the Bikan District, with white-walled storehouses along canals.

The region is also rich in culture, home to museums, galleries and shops that sell local crafts.

17. Tomonoura, Hiroshima Prefecture

Tomonoura is a historical port town that has kept its traditional feel.

The picturesque town and a sense of Old World plaza have inspired countless artists and filmsets, and worth a two hr visit.

18. Teshima, Kagawa Prefecture

Teshima is one of the “art islands” in the Seto Inland Sea, famous for its contemporary art installations and breathtaking scenery.

Among the highlights is the Teshima Art Museum, notable for its minimalist design and integration with nature.

19. Kawagoe, Saitama Prefecture

“I didn’t know where to go. I had never been to Tokyo before and I only had one day. So for the first day, I went to Kawagoe.” Kawagoe is known as “Little Edo” for its feel of Edo-period Japan and is a short train ride from Tokyo.

With its well-preserved streets, traditional warehouses and sweet shops, the town is a tantalizing day trip.

20. Kurokawa Onsen, Kumamoto Prefecture

Kurokawa Onsen is a quaint hot spring town set amongst the mountains of Kyushu.

But the town is famous as an ideal sojourn to sink into Japan’s onsen culture in really authentic surroundings — it’s billed as a place of atmospheric ryokan (traditional inns), outdoor baths and hot springs soaking.

In conclusion, 20 Must-Visit Hidden Gems in Japan

Japan hordes of gems that stand the test of time and yet remain off the beaten path.

From remote islands and ancient temples to historic towns and breathtaking natural scenery, these 20 must-see spots offer you a glimpse of Japan that few travelers ever experience.

So, the next time you book a trip to Japan, get off the beaten track and discover these hidden gems.

They are guaranteed to create memories and experiences as unforgettable as they are unique.